Resources
Used By
The Course Instructor:
Unless otherwise noted by Dr.
Cooper,
all material presented to students in this course represents either i)
selected portions of information contained within the course’s
textbook(s)
or supplementary material, ii) information published in the scientific
literature, iii) current issues reported by the news media, or iv)
knowledge otherwise commonly known to professional
microbiologists or mycologists. Dr. Cooper makes no claim of
“ownership” of facts and/or ideas presented in this course unless
specifically noted. All facts and/or ideas are used solely for
educational purposes. Dr. Cooper makes every effort to
appropriately attribute facts and/or
ideas to their proper sources.
Academic
Dishonesty:
Academic
dishonesty, in any form, will not be tolerated in this course.
Students
are urged to read the
section on
“Academic Honesty” as printed
on page 40 of the YSU Undergraduate
Bulletin, 2006-2007.
Students should also be aware of pertinent sections in The Code (the latter
is a PDF document).
Any student enrolled in BIOL
4848/6948
shown to have committed academic
dishonesty in this course is deemed solely accountable for his/her
actions and will receive a final course grade of “F”.
Additional sanctions may also be sought, i.e., a recommendation by the
instructor for dismissal of the student from the University.
Be aware that this policy includes unauthorized access of computer
files associated with this course. The web site files associated
with BIOL 4848/6948 are monitored for unauthorized access.
Entering
these files even by “accident” will be considered a violation of
academic integrity.
Disability
Statement:
In accordance with
University procedures, students who have a documented disability and
require accommodations to obtain equal acess in this course must
contact Dr. Cooper privately
to discuss the individual's specific
needs. Persons enrolled in this course and currently having a
documented disability must notify Dr. Cooper of their needs no later
than January 31, 2007. In addition, students having a disability
must be properly registered with the Disability
Services Office (Beeghly Hall, Room 3310; telephone
330.941.1372). Also, to be properly
registered, a letter of
accommodations verifying the student's eligibilty must be
provided. Individuals who develop a disability during the
semester must notify Dr. Cooper within one week after being properly
registered with the Disability Services
Office. Students with disabilities are reminded that in addition
to certain rights and privileges covered by law and University policy,
they also have obligations and responsibilities that must be met.
Students are strongly encouraged to review these rights and
responsibilities as outlined on the Disability
Services Office
web page.
Course
Calendar:
Calendars
containing the essential elements of the lecture portion of this
course is available through
the buttons provided below as well as along the
right side of this web page. In addition, for graduate students
only, a separate calendar detailing the laboratory exercises for BIOL
6948 is available through the the button provided below as well as to
right side of this web web. Please refer to the Syllabus Disclaimer statement regarding
changes to the calendar.
Link To Lecture Section Calendar:

Link To BIOL 6948 Laboratory
Calendar:
Attendance:
While attendance will not
be taken, students are expected to
attend all lectures. Likewise, graduate students are expected to
attend all laboratory sessions. Arriving late to lecture or
laboratory is not an
acceptable practice for
students in this course. The lecture for this course begins promptly at
2:00 PM on Tuesdays and Thursdays throughout the semester. The
laboratory section for graduate students begins promptly at 3:30 PM on
Tuesdays. (NOTE:
This course operates on “Ward Beecher Time” which may or may not
correlate to the time that exists at other places on campus.
Students are strongly encouraged to synchronize their
timepieces.)
Special Attendance
Note #1: Except
for extenuating circumstances,
it is generally unacceptable for a student to request to take an
examination at a time other than the scheduled date. Having a
second
examination the day before, the day after, or on the same day is
absolutely certain not to evoke any sympathy from Dr. Cooper (after
all, the nickname given to him by his admirers is BOB, an acronym for Bastard of Biology!).
Please do not even ask for special dispensation for such a
reason.
However, Dr. Cooper is willing to listen (and perhaps chuckle to
himself) other reasons that a student may deem to be extenuating
(please note - havng in excess of two grandmothers die during the
semester will be considered suspicously gratuitous). The
decision
regarding the student's reasoned argument/request for a change in the
examination date/time is solely at Dr. Cooper's discretion and, once
rendered, is final.
Special Attendance Note #2:
It is entirely
unacceptable for any student to request that he/she be permitted
to
take Examination II earlier than March 8th or the OPTIONAL final
examination prior to May 8th in order to shorten their
time on campus or to leave for another commitment (e.g, vacation, start
a job, etc.). Such requests will not only be acidly received,
they will be strongly rebuked. Dr. Cooper's advice - Don't
Mess With BOB.
Special Attendance
Note #3: Attention
Graduate Students!!! It is possible that the actual day that the
laboratory section meets may be changed to a time more suitable for
everyone's academic/teaching schedule. Also, some laboratory
exercises will require time outside the scheduled session. The
proper and successful
completion of your work will depend upon your dedication to this course
and its attendance requirements.
Required MyYSU Mail Account:
All electronic
communications with students enrolled in BIOL 4848/6948 will only be
made
using the University’s MyYSU Email
system. All BIOL 4848/6948 students must establish their MyYSU Email
accounts if they have not done so already. To activate your free MyYSU Emaill
account, go the following URL: http://helpdesk.ysu.edu.
Please note that a MyYSU Email account does not have to supplant your
current non-MyYSU Email service. A
feature MyYSU Email is that all
incoming messages can be forwarded to another email account.
Hence, you can retain your present services and still receive all
communications from Dr. Cooper.
Distribution of
Course Material:
All original material on
the BIOL 4848/6948 course web site, as well as all original material
presented in either the classroom or laboratory, including
orally-transmitted lectures, is considered protected by a copyright
held by Dr. Cooper. In general, students enrolled in BIOL
4848/6948
have permission to download, print, and distribute materials
copyrighted by Dr. Cooper without his expressed written permission so
long as such materials are not used for activities i) associated with
the commission of academic dishonesty, ii) intended to circumvent
course policies, iii) which result in monetary profit by either the
student or others, and iv) that do not violate copyright
protections. For further information, please see Copyright Restrictions.
Other
Responsibilities/Expected Behavior:
Electronic
Communication/Data
Storage Devices. During lecture and laboratory, all
cellular telephones,
pagers, or other electronic communication devices must be turned off or
set in the quiet/vibration mode of operation. Data storage
devices (e.g., personal desk assistants, lap top computers, etc.) may
be used during lectures and only if they do not cause distraction to
other students or the course instructor. Students failing to meet
this expectation will be invited to leave the classroom until such time
that they comply with this policy.
During examinations,
quizzes, etc., all electronic devices (including cellular telephones,
personal desktop
assistants, computers, etc.) are strictly prohibited.
Students violating this policy will be suspected to have committed
academic dishonesty.
Recording
of Lectures.
Students are reminded that Dr. Cooper’s lectures are copyright
protected (see Distribution of Course Material
above). However, students are permitted to electronically record
lectures in the classroom provided that: i) such activity is not
disruptive to the instructor or fellow students; ii) the recording is
used solely for the personal study of the student making the recording;
iii) the recording is not sold or transmitted to others in any form
without the expressed written permission of Dr. Cooper; and iv) the
recording does not serve as a substitute for attending class or
actively participating in the lecture.
Examinations
and Quizzes.
Specific dates for lecture examinations have been scheduled in advance
(see Course Calendar). All students are expected to be in
attendance unless prior arrangements have been made with Dr
Cooper.
Examinations are to be
taken without assistance from other students. If you are aware of
any student cheating or having a copy of the current exam, please
contact the instructor. Academic dishonesty in any form will not
be tolerated in this course. Penalties for such action will be
enforced (see Academic Dishonesty
above).
Decorum.
At all times,
students are expected to exhibit behavior appropriate for young (or
even older) adults. Such behavior is delimited by University
policy. Inappropriate behavior, including disrespect for Dr.
Cooper, is subject to expulsion from one or more lecture sessions
without the opportunity to begin or complete the assigned
exercises. In cases of extremely inappropriate behavior, Dr.
Cooper will recommend more severe sanctions (including dismissal from
the University).
Turnitin.com:
Throughout the semester,
students will be submitting a number of written assignments for
grading. To help improve your writing and research skills,
encourage collaborative online learning, and to ensure originality of
student work, these assignments will be submitted electronically via Turnitin.com. To begin the
process of electronic submission, students need to login to
Turnitin.com and create a User Profile. It may be helpful to
download the Turnitin
Student User Guide (this is a PDF document) for detailed
instructions regarding this activity.
To briefly summarize the
process, students should point their web browser to http://www.turnitin.com to begin
the login process. Follow the instructions starting on page 4 of
the Turnitin Student User Guide. For your email address, you may
use any active account. However, remember that Dr. Cooper will
only communicate with students via their MyYSU Email account.
Follow
the process stated in the Turnitin Student User Guide to join my class,
“Biology of Fungi”. The class/account ID is 1784807 and
the join/enrollment password is “biol4848” (“biol” is all in lower
case; the password is case-sensitive). Once you have established
your account, you are now ready to submit copies of your assignments.
Grading:
Grading
Scale for Undergraduates. A
student’s final grade in BIOL 4848 will be based upon scores earned by
different evaluation schemes throughout the semester. There are a
total of 400 points available for the student to earn. Final
course grades will be assigned based upon the following scale:
To Earn a Grade of:
|
You Must Earn: |
A
|
360
points or more
|
B
|
320
to 359 points
|
C
|
280
to 319 points
|
D
|
240
to 279 points: |
F
|
Less
tha 240 points
|
NOTE:
This scale is absolute. You must have earned the required number
of points to receive the desired grade. In other words, a student
earning 359 points will receive a grade of "B". No exceptions
will be made except in cases of mathematical error on the part of the
course instructor. Moreover, proof of error rests entirely with
the student. Any requests for additional points, "curving", or
consideration for so-called extenuating circumstances will be resoundly
rejected.
|
Grading Scale for Graduate students.
A
student’s final grade in BIOL 6948 will be based upon scores earned by
different evaluation schemes throughout the semester. There are a
total of 650 points available for the student to earn. Final
course grades will be assigned based upon the following scale:
To Earn a Grade of:
|
You Must Earn: |
A
|
585
points or more
|
B
|
520
to 584 points
|
C
|
455
to 519 points
|
D
|
390
to 454 points: |
F
|
Less
than 390 points
|
| NOTE:
This scale is absolute. You must have earned the required number
of
points to receive the desired grade. In other words, a student
earning 584 points will receive a grade of "B". No exceptions
will be
made
except in cases of mathematical error on the part of the course
instructor. Moreover, proof of error rests entirely with the
student.
Any requests for additional points, "curving", or consideration for
so-called extenuating circumstances will be resoundly rejected. |
Incomplete
Grade. An
incomplete grade can only be given when requested by a student having
an approved extenuating circumstance (as deemed justifiable solely by
Dr. Cooper) as well as a passing grade of "C" or better. An
incomplete
grade must be resolved within the guidelines established by the
University. For specific information, see page 36 of the
2006-2007
version of the YSU Undergraduate
Bulletin.
Grade
Components. The following table lists the different
components that comprise the total available points in this
course. Please note the different components for undergraduates
enrolled in BIOL 4848 and graduate students enrolled in BIOL 6948.
Grade
Component:
|
Points:
|
Take-Home
Examination
I (BIOL 4848 Only)
|
75
|
Take-Home
Examination I (BIOL 6948 Only)
|
100
|
| Take-Home
Examination
II (BIOL 4848 Only) |
75
|
| Take-Home
Examination II (BIOL 6948 Only) |
100
|
| Take-Home
Examination
III (BIOL 4848 Only) |
75
|
| Take-Home
Examination III (BIOL 6948 Only) |
100
|
Examination
IV - In-Class (All Students)
|
50
|
| Mycology
Essay (BIOL 4848 Only) |
75
|
| Mycology
Essay (BIOL 6948 Only) |
50
|
In-Class
Presentation (All Students)
|
50
|
| Laboratory
Research Paper (BIOL 6948 Only) |
100
|
| Laboratory
Notebook (BIOL 6948 Only) |
100
|
Total
Available Points - BIOL 4848
|
400
|
Total
Available Points - BIOL 6848
|
650
|
BONUS POINTS: A one-time
opportunity to garner ten (15) bonus points will be offered as desribed
below.
The following information
provides a description and important information regarding each of the
above grade components:
- Examinations:
Four
examinations have been scheduled (see Course
Calendar for specific dates/times). Students should expect
to be tested over all the material
covered in lectures as well as that contained in the assigned
readings. Typically, Dr. Cooper does not take examination
questions from material outside of that covered in lecture unless he
specifically informs students that they are responsible for the
information from other sources such as the reading assignments.
Examination questions
may be of any type, including essay, short answer, fill-in-the-blank,
true/false, multiple choice, and/or matching. Examinations I-III,
which are take-home examinations, will be all essay/short answer type
questions. Examination IV, which will be taken in class, may have
a variety of question formats.
Finally, an OPTIONAL
final examination will be offerred on Tuesday, May 8th. This
examination will be comprehensive consisting of all essay/short answer
questions and worth 275 points for undergraduates and 350 points for
graduate students. This examination will replace all the scores
of Examinations I-IV. If a student commits to this opportunity,
then the final examination score will be the total points recorded for
the previous scores. That is, the student doesn't have the choice
of taking the best score of the Examination I-IV total or the opition
final examination. Only the latter will count. Students
wishing to take the optional final examination must notify Dr. Cooper
no later than 5:00 PM on
- Mycolgy Essay: Based upon your reading
of Mr.
Bloomfield's Orchard,
you will write and submit an essay. Details will be provided by
Dr. Cooper.
- In-Class
Presentation: The final few
weeks of the course, students will provide lectures based upon selected
chapters from Fungal Biology. Details will be provided by Dr. Cooper.
- Laboratory
Research Paper and Notebook (BIOL 6848 Students Only):
Graduate students must submit a research paper on the topic of their
laboratory work to Turnitin.com by 11:00 AM on May 4th and a hard copy
to Dr. Cooper by 12:00 PM on the same day. The laboratory
notebook
that the student kept is due at that time as well. Specific
details as to the composition of the paper and notebook will be
provided by Dr. Cooper early in the semester. The research paper
is worth up to 100 points and the notebook is worth up to 100 points of
a student's course score/grade.
- Bonus
Point Opportunity: QUEST, the annual research colloquim
for YSU students, will be held on Tuesday, April 3rd. There will
be no lecture that day. However, students are encouraged to
attend the colloquim. In addition, a bonus point exercise based
upon the QUEST presentations will be available for up to 15 points
towards a student's course score. Details will be provided by Dr. Cooper.
- Extra
Credit: As in the
Capital One commercial, "The answer is always NO!" Other than
those possibly provided through examinations and quizzes, as well as
the Bonus Point Opportunity, there is no extra credit opportunities in
this course. Do not even think of asking Dr. Cooper for such an
opportunity. Again, Don't Mess Wtih BOB.
Return
of Scores. Dr. Cooper
makes every effort to
return examination scores, quizzes, etc., in a
reasonable time frame. Please be patient. Grading
assignments/tests by hand is a rather time consuming exercise and
machine-graded examinations/quizzes often are delayed due to mechanical
problems or delays with the campus mail.
Examinations,
quizzes,
etc. will be returned at the end of a particular lecture after the
scores have been recorded. A student absent from class when a
graded paper/examination is returned must see Dr. Cooper during his
scheduled office hours or otherwise make an appointment to meet with
him.
Re-grading.
Though it does not happen often, errors in grading do occur. In
addition, badly worded questions sometimes are incorporated into an
examination or quiz. Other errors or omissions can also occur
such as the absence of any possible answers to multiple-choice
questions. Students who believe that an error has been committed
are always able to appeal their case to Dr. Cooper.
However, students requesting a review of grading or scores are apprised
of the following conditions:
- All requests
for re-grading/re-scoring must come within 72 hours (not including
holidays and weekends), of
scores being returned or posted,
whichever comes first. Requests that are submitted beyond that
time frame will not be honored.
- Frivolous
requests for re-scoring/re-grading items will be rejected
without further appeal. The determination of "frivolous" is
entirely at Dr. Cooper's discretion.
- Students must
present written arguments for re-scoring/re-grading
an item. The argument must describe the nature of the dispute and
have supported reasons why an item should be re-scored/re-graded.
The determination if an argument is justified and actionable is entirely at
Dr. Cooper's discretion.
- On any appeal
for re-grading or re-scoring, Dr. Cooper reserves the
right to re-grade and/or re-score the entire examination, quiz, etc.,
being questioned.
- Decisions to
re-grade or re-score any item are entirely at the discretion of Dr.
Cooper. Once a decision has been made not to honor an appeal, or
once a decision has been made that does not favor the student's
argument, that decision is final. No other appeals by that
student pertaining to that particular examination, quiz, etc., will be
heard.
Students are
strongly encouraged to consider the above conditions prior to making an
appeal for re-grading or re-scoring of an item.
Permission to Post
Grades/Scores:
On a periodic basis, Dr. Cooper will post current
scores on this web page (click on
the “Current Grades”
button that is usually
located near the top
of each web page or on the one below). However, to have
your grades/scores
posted, you must
give Dr. Cooper your explicit permission to do so using the Grade
Posting
Permission Form (downloadable as a PDF file) on which you must
provide
an unique personal identification number (PIN) of your own
choosing. These details will be covered in a handout given to
students
during the first meeting of the course. A student's permission to
post his/her grades/scores is revocable upon receipt by Dr. Cooper of a
written request to do so. Please
Note: Once a
student grants permission to post his/her grades/scores, provided that
Dr. Cooper and the
University take all
reasonable
security precautions, they shall hold no
responsibility for the misappropriation of this
information by other individuals.
Acknowledgement of
Syllabus:
Students are required
to submit a signed and completed Syllabus Acknowledgement Form to Dr.
Cooper no later than 2:00 PM on January 30th. This form can be
accesses as a PDF document through the button link below and elsewhere
in the course web site. Failure to properly submit this form will
cause Dr. Cooper to withhold the administration of any examinations,
quizzes, etc., as well as the recording of any scores/grades to the
student(s) who do not comply with this requirement. Should
a student have any questions or concerns about this document or its
contents, please contact Dr. Cooper.
|
Course Policies Web Page
Table
of Contents
To
access a general topic, click on the mini-Pete logo to
the left of the
section you wish to visit. To go to a specific topic, chose the
appropriate "click here" link or the underline topic itself.
Resources Used By The Instructor
Academic Dishonesty
Disability Statement
Course Calendar
Attendance
Required MyYSU Email
Account
Distribution of Course Material
Other Responsibilities/Expected
Behavior
Turnitin.com
Grading
Permission to Post Grades/Scores
Acknowledgement of Syllabus
Course
Related Links
First
Lecture Day Materials
Other
Links of Interest
Dr. Cooper's
Contact Information
Office Hours:
(WBSH, Room 4015)
- Mondays -
Fridays, 11:00 AM - 12:00 PM
- Other times by appointment only
Telephone/Voice Mail: 330.941.1361
Email:
crcooper01@ysu.edu
Peronospora, a chromistan fungus
(Phylum Oomycota) that causes agriculturally significant diseases of
plants like tobacco and grapes [taken from The Fifth Kingdom on CD-ROM, 2005;
© Bryce Kendrick]
|
A false colored image
of the conidia and conidiophores of Penicillium
roqueforti as observed under a scanning electron microscope.
This image is used with the expressed permission of Dr. Dennis Kunkel,
who also holds the copyright to this and other images used throughout
this course web page. To see more stunning images like the above,
as well as other microbes, visit Dr. Kunkel's web page at www.denniskunkel.com.
Course Policies Web Page
Table
of Contents
Course
Related Links
First
Lecture Day Materials
Other
Links of Interest
Dr. Cooper's
Contact Information
Office Hours:
(WBSH, Room 4015)
- Mondays -
Fridays, 11:00 AM - 12:00 PM
- Other times by appointment only
Telephone/Voice Mail: 330.941.1361
Email:
crcooper01@ysu.edu
|
Scanning electron
micrograph of fruiting bodies from the slime mold Ceratiomyxa [taken from The Fifth Kingdom on CD-ROM, 2005;
© Bryce Kendrick] |
Apothecial fruting
structures of the fungus Sarcoscypha
coccinea
(Phylum Ascomycota) [taken from The
Fifth Kingdom on CD-ROM, 2005;
© Bryce Kendrick]
Hyphae of Achlya (Phylum
Oomycota) growing from a hemp
seed and producing long, white asexual zoosporangia and round white
sexual oogonia [taken from The Fifth
Kingdom on CD-ROM, 2005;
© Bryce Kendrick]
Scanning electron
micrograph of echinolated ("spiny") conidiospores of the fungus Memnoniella echinata. This image is used
with the expressed permission of Dr. Dennis Kunkel,
who also holds the copyright to this and other images used throughout
this course web page. To see more stunning images like the above,
as well as other microbes, visit Dr. Kunkel's web page at www.denniskunkel.com.
|
Light micrograph of
conidiospores of the darkly-pigmented fungus Bipolaris specifera. This image is
courtesy of Dr. Michael McGinnis and the copyright is held by DoctorFungus Corporation.
Course
Related Links
Release of motile
zoospores of the fungus Chytridium
(Phylum Chytridiomycota). Note the flagellated zoospore near the
center of this light microgrpah [taken from The Fifth Kingdom on CD-ROM, 2005;
© Bryce Kendrick]
Dr. Cooper's
Contact Information
Office Hours:
(WBSH, Room 4015)
- Mondays -
Fridays, 11:00 AM - 12:00 PM
- Other times by appointment only
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|